SNP Profiles of CCN 51 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	CT	AC	GG	GT	AT	AC	CT	AG	GT	AA	TT	CC
1._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
2._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
3._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
4._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
5._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
6._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
7._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
8._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
9._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
10._CCN_51	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
11._GC-07-019-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
12._GC-07-019-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
13._GC-07-019-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
14._GC-07-019-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
15._GC-07-019-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
16._GC-06-4-1-04	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
17._GC-07-019-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
18._GC-07-019-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
19._GC-07-19-1-21	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
20._RUQ_1736	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
21._MITC-000000	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
22._CCN_51	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	AA	CC	AA	AA	CC	AA	CC	CC	TT	AA	CG
1._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
2._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
3._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
4._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
5._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
6._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
7._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
8._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
9._CCN_51	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
10._CCN_51	_	_	_	_	_	AC	_	CC	_	_	_	_	_	_
11._GC-07-019-1-21	AG	_	_	_	_	AC	_	CC	_	_	CC	_	_	_
12._GC-07-019-1-21	AG	_	_	_	_	AC	_	CC	_	CC	CC	_	_	_
13._GC-07-019-1-21	AG	_	_	_	_	AC	_	CC	_	CC	CC	_	_	_
14._GC-07-019-1-21	AG	_	_	_	_	AC	_	CC	_	CC	CC	_	_	_
15._GC-07-019-1-21	AG	_	_	_	_	AC	_	CC	_	CC	CC	_	_	_
16._GC-06-4-1-04	AG	_	_	_	_	AC	_	CC	_	CC	CC	_	_	_
17._GC-07-019-1-21	AG	_	_	_	_	AC	_	CC	_	CC	CC	_	_	_
18._GC-07-019-1-21	AG	_	_	_	_	AC	_	CC	_	CC	CC	_	_	_
19._GC-07-19-1-21	AG	_	_	_	_	AC	_	CC	_	CC	GG	_	_	_
20._RUQ_1736	AG	_	_	_	_	AC	_	CC	_	CC	GG	_	_	_
21._MITC-000000	AG	_	_	_	_	AC	_	CC	_	CC	GG	_	_	_
22._CCN_51	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CC	TT	GG	GG	CT	CT	CC	AA	TT	CC	AG	GG	AA
1._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
2._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
3._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
4._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
5._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
6._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
7._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
8._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
9._CCN_51	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
10._CCN_51	AG	_	_	GG	_	_	_	_	_	_	_	_	_	AA
11._GC-07-019-1-21	AG	_	_	GG	GG	_	_	CC	_	CG	_	AG	_	AA
12._GC-07-019-1-21	AG	_	CC	GG	GG	_	_	CC	_	CG	CC	AG	_	AA
13._GC-07-019-1-21	AG	_	CC	GG	GG	_	_	CC	_	CG	CC	AG	_	AA
14._GC-07-019-1-21	AG	_	CC	GG	GG	_	_	CC	_	CG	CC	AG	_	AA
15._GC-07-019-1-21	AG	_	CC	GG	GG	_	_	CC	_	CG	CC	AG	_	AA
16._GC-06-4-1-04	AG	_	CC	GG	GG	_	_	CC	_	CG	CC	AG	_	AA
17._GC-07-019-1-21	AG	_	CC	GG	GG	_	_	CC	_	CG	CC	AG	_	AA
18._GC-07-019-1-21	AG	_	CC	GG	GG	_	_	CC	_	CG	CC	AG	_	AA
19._GC-07-19-1-21	_	_	_	CC	GG	_	_	CC	_	CG	GG	AG	_	AA
20._RUQ_1736	_	_	_	CC	GG	_	_	CC	_	CG	GG	AG	_	AA
21._MITC-000000	_	_	_	CC	GG	_	_	CC	_	CG	GG	AG	_	AA
22._CCN_51	GG	_	_	TT	_	_	_	_	_	_	CC	_	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CC	AT	CT	AG	CT	CT	GT	AA	CT	TT	GT	AT	AG
1._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
2._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
3._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
4._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
5._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
6._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
7._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
8._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
9._CCN_51	_	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
10._CCN_51	_	_	_	_	_	_	CT	_	_	_	TT	_	_	_
11._GC-07-019-1-21	CC	_	_	_	_	_	CT	_	_	_	TT	_	_	_
12._GC-07-019-1-21	CC	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
13._GC-07-019-1-21	CC	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
14._GC-07-019-1-21	CC	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
15._GC-07-019-1-21	CC	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
16._GC-06-4-1-04	CC	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
17._GC-07-019-1-21	CC	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
18._GC-07-019-1-21	CC	_	_	_	AG	_	CT	_	_	_	TT	_	_	_
19._GC-07-19-1-21	_	_	_	_	AG	_	_	_	_	_	AA	_	_	_
20._RUQ_1736	_	_	_	_	AG	_	_	_	_	_	AA	_	_	_
21._MITC-000000	_	_	_	_	AG	_	_	_	_	_	AA	_	_	_
22._CCN_51	_	_	_	_	AA	_	CC	_	_	_	GG	_	_	_

	57	58	59	60
_Input profile	GG	GG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CCN_51	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-07-019-1-21	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-07-019-1-21	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-07-019-1-21	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-07-019-1-21	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-07-019-1-21	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-06-4-1-04	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-07-019-1-21	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-07-019-1-21	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-07-19-1-21	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._RUQ_1736	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._MITC-000000	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._CCN_51	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CCN_51 RUQ_1737

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

3._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

4._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

5._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

6._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

7._CCN_51

96.2 %
13 shared markers

Verified View View all Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

8._CCN_51

96.2 %
13 shared markers

View View all Clone Any

USAPEN

Dapeng Zhang, 2016

9._CCN_51

96.2 %
13 shared markers

View View all Clone Any

USASPC

Dapeng Zhang, 2016

10._CCN_51

95 %
10 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

11._CCN_51 GC-07-019-1-21

91.2 %
17 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

12._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

13._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

14._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

15._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Reference View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

16._CCN_51 GC-06-4-1-04

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

17._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

18._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

19._CCN_51 GC-07-19-1-21

61.8 %
17 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1

Notes: Brazil_Selections_Poss_grandparent

20._CCN_51 RUQ_1736

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._CCN_51 MITC-000000

61.8 %
17 shared markers

Offtype View View all

USDA-SHRS, United States of America

22._CCN_51

46.2 %
13 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527